a reference genome or database, including all alternative transcripts and splice 2012-05270 · Experimentbaserad strukturmodellering av protein complex:

Structural modeling of protein-protein complexes - Genome-wide analysis of protein-protein interactions (PPI) - Database GWIDD of structural PPI models

Late embryogenesis abundant protein 1 (LEA1_APHAV) (AavLea1) B-cell antigen receptor complex-associated protein beta chain [Isoform Long] av A Lindström · 2008 — solvent models on the refinement of the molecule-protein complex geometry created screen very large virtual chemical databases for new drug molecules, av P Umate · 2011 · Citerat av 90 — Helicases are motor proteins which catalyze the unwinding of duplex nucleic acids in lymphoid-specific helicases, DNA helicase INO80 complex homolog 1 and 2 A BLAST against human RefSeq protein database on NCBI with individual A modified database search strategy leads to improved identification of in vitro brominated peptides spiked into a complex proteomic sample however, confident assignment of brominated peptides from protein database searches required a Few investigations have been performed on protein bromination on a proteomic standard, spiked into a complex trypsin-digested proteomic background, in an logo, CaMPDB: Calpain for Modulatory Proteolysis Database XSB0626, caspase 9 isoform alpha preproprotein variant [Homo sapiens], Homo sapiens XSB2953, coatomer protein complex, subunit beta 1 [Mus musculus], Mus musculus BacMet Predicted Database 4_1_40B, Copper (Cu), Silver (Ag), putative cation efflux system protein CusA. cusA/ybdE, 194428006, ZP_03060551.1, FASTA av K Aripaka · 2019 · Citerat av 9 — Database analysis revealed a correlation between TRAF6 mRNA and Wnt 2.13 Label-free monitoring of a TRAF6-LRP5 protein interaction. av T Hatzihristidis · 2015 · Citerat av 9 — Thus, MetaPhOrs is the most comprehensive database of homology protein–protein interaction, catalytic and small-molecule binding. Search BioGRID for SARS-CoV-2 Protein Interactions | Download SARS-CoV-2 and Coronavirus-Related Interactions. Arabidopsis thaliana (Columbia) A liquid chromatography-mass spectrometry-based metabolome database for receptor-like kinase1 protein complex includes brassinosteroid-insensitive1. A flavoprotein (FAD). A component of the multienzyme 2-oxo-acid dehydrogenase complexes.

Protein complex database

In exercising their intended function, proteins work Comprehensive protein complex prediction and annotation will provide strong functional annotation clues about hypothetical proteins. We constructed a new human protein complex database with quality index (PCDq) to provide this comprehensive annotation of human protein complexes. Homologous proteins, with the same functionality, which would be inferred by sequence similarity to form a complex but for which no physical link has been demonstrated, e.g. proteins A and B have been shown to physically interact and form a functional complex, protein C is a homologue of protein B by sequence similarity and is know to have the same function as B but protein A-C interaction has InterEvol database: Exploring the structure and evolution of protein complex interfaces.pdf Available via license: CC BY-NC 3.0 Content may be subject to copyright.

Reactome and BioGRID have some protein complexes. Then there's also FuzDB.The Gene Ontology cellular component domain also has a term 'macromolecular complex' (GO:0032991). However, keep in mind that different resources have different notion of what a complex is and even for the same definition, the granularity may be different i.e. what is one complex in one database may be two or three (sub

protein complex identified as [antibody identifier] ( [gene symbol of bait protein]) a-Mip1 () protein complex identified as [antibody identifier] ( [gene symbol of bait protein]) a-NEK7 (NEK7) protein complex identified as [antibody identifier] ( [gene symbol of bait protein]) Showing 1 to … 2018-10-10 Schrödinger Release 2021-1, Protein-Ligand Database (PLDB), Schrödinger, LLC, New York, NY, 2021. ö "The Role of Bridging Water and Hydrogen Bonding as Key Determinants of Noncovalent Protein–Carbohydrate Recognition" Version: 20.1 Atlas updated: 2021-02-24 release history Proteome analysis based on 26941 antibodies targeting 17165 unique proteins Reactome and BioGRID have some protein complexes.

The search feature is based on the SweCRIS database. When autocomplete results are available Computations for interrogating protein complex architecture.

If you just want to browse the database without searching something specific, you may find the Table and Interactive Chart views usful.. Table. The table page shows all proteins in the databse, with each row representing a single protein "state" (that is, a multi-state protein such as a photoconvertible protein will appear in multiple rows of the table; multistate proteins have small a protein-containing complex binding Ontology molecular_function Synonyms protein complex binding, macromolecular complex binding Alternate IDs GO:0032403 Definition Interacting selectively and non-covalently with a macromolecular complex. Source: GOC:jl Comment None History See term history for GO:0044877 at QuickGO PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset. We constructed a new protein complex database PCDq including both predicted and curated human protein complexes.

A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure. protein complex binding, macromolecular complex binding Alternate IDs GO:0032403 Definition Interacting selectively and non-covalently with a macromolecular complex. The protein complex provides energy in the form of an electrochemical gradient, which may be used by either MITOCHONDRIAL PROTON-TRANSLOCATING ATPASES or BACTERIAL PROTON-TRANSLOCATING ATPASES. Entry Version Abbreviation Entry Term(s) Electron Transport Chain Complex Proteins Add Pharm Action Registry Number 0 CAS Type 1 Name NLM Classification # Browse.
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Protein complex members for well-defined multi-subunit complexes of known composition can be named according to the complex followed by the specific subunit name.

In order to facilitate this, we present PROXiMATE (PROtein–protein compleX MutAtion ThErmodynamics), a thermodynamic database of missense mutations in heterodimeric protein–protein complexes, with structural and functional information, and links to major databases for protein sequence, structure and interaction networks. Since 1971, the Protein Data Bank archive (PDB) has served as the single repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies. The Worldwide PDB (wwPDB) organization manages the PDB archive and ensures that the PDB is freely and publicly available to the global community. In that scope, the InterEvol database was designed for exploring 3D structures of homologous interfaces of protein complexes.
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by the main Swedish funding bodies. The search feature is based on the SweCRIS database. Computations for interrogating protein complex architecture.

2018 Jan 16;171:87-94.

av ELL SONNHAMMER · Citerat av 5 — Protein Family Database, Protein Domain Identification, Protein Sequence or complex picture of homologous domains, a significant improvement in the

As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. The RCSB PDB also provides a variety of tools and resources. Users can perform simple and advanced searches based on annotations relating to sequence, structure and function. These molecules are visualized, downloaded, and analyzed by users who range from students to specialized scientists. Description: Based on integrated PPI data and literature, we have developed a human protein complex database with a complex quality index (PCDq), which includes both known and predicted complexes and subunits. We integrated six PPI data (BIND, DIP, MINT, HPRD, IntAct, and GNP_Y2H), and predicted human protein complexes by finding densely connected regions in the PPI networks.